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MANTRA: a Framework for Multi-stage Adaptive Noise TReAtment During Training

Zhao, Zixiao, Fard, Fatemeh H., Wu, Jie JW

arXiv.org Artificial Intelligence

The reliable application of deep learning models to software engineering tasks hinges on high-quality training data. Yet, large-scale repositories inevitably introduce noisy or mislabeled examples that degrade both accuracy and robustness. While Noise Label Learning (NLL) has been extensively studied in other fields, there are a few works that investigate NLL in Software Engineering (SE) and Large Language Models (LLMs) for SE tasks. In this work, we propose MANTRA, a Multi-stage Adaptive Noise TReAtment framework that embeds noise diagnosis and mitigation directly into the fine-tuning process of code-Pretrained Language Models (PTM) and code-LLMs. We first investigate the effect of noise at varying levels on convergence and loss trajectories of the models. Then we apply an adaptive dropout strategy guided by per-sample loss dynamics and Gaussian Mixture Model clustering to exclude persistently noisy points while preserving clean data. Applying to code summarization and commit intent classification, our experiments reveal that some LLMs are more sensitive to noise than others. However, with MANTRA, the performance of all models in both tasks is improved. MANTRA enables researchers and practitioners to reduce the impact of errors introduced by the dataset in training, saves time in data cleaning and processing, while maximizing the effect of fine-tuning.


Urban Computing in the Era of Large Language Models

Li, Zhonghang, Xia, Lianghao, Ren, Xubin, Tang, Jiabin, Chen, Tianyi, Xu, Yong, Huang, Chao

arXiv.org Artificial Intelligence

Urban computing has emerged as a multidisciplinary field that harnesses data-driven technologies to address challenges and improve urban living. Traditional approaches, while beneficial, often face challenges with generalization, scalability, and contextual understanding. The advent of Large Language Models (LLMs) offers transformative potential in this domain. This survey explores the intersection of LLMs and urban computing, emphasizing the impact of LLMs in processing and analyzing urban data, enhancing decision-making, and fostering citizen engagement. We provide a concise overview of the evolution and core technologies of LLMs. Additionally, we survey their applications across key urban domains, such as transportation, public safety, and environmental monitoring, summarizing essential tasks and prior works in various urban contexts, while highlighting LLMs' functional roles and implementation patterns. Building on this, we propose potential LLM-based solutions to address unresolved challenges. To facilitate in-depth research, we compile a list of available datasets and tools applicable to diverse urban scenarios. Finally, we discuss the limitations of current approaches and outline future directions for advancing LLMs in urban computing.


On Developers' Self-Declaration of AI-Generated Code: An Analysis of Practices

Kashif, Syed Mohammad, Liang, Peng, Tahir, Amjed

arXiv.org Artificial Intelligence

AI code generation tools have gained significant popularity among developers, who use them to assist in software development due to their capability to generate code. Existing studies mainly explored the quality, e.g., correctness and security, of AI-generated code, while in real-world software development, the prerequisite is to distinguish AI-generated code from human-written code, which emphasizes the need to explicitly declare AI-generated code by developers. To this end, this study intends to understand the ways developers use to self-declare AI-generated code and explore the reasons why developers choose to self-declare or not. We conducted a mixed-methods study consisting of two phases. In the first phase, we mined GitHub repositories and collected 613 instances of AI-generated code snippets. In the second phase, we conducted a follow-up practitioners' survey, which received 111 valid responses. Our research revealed the practices followed by developers to self-declare AI-generated code. Most practitioners (76.6%) always or sometimes self-declare AI-generated code. In contrast, other practitioners (23.4%) noted that they never self-declare AI-generated code. The reasons for self-declaring AI-generated code include the need to track and monitor the code for future review and debugging, and ethical considerations. The reasons for not self-declaring AI-generated code include extensive modifications to AI-generated code and the developers' perception that self-declaration is an unnecessary activity. We finally provided guidelines for practitioners to self-declare AI-generated code, addressing ethical and code quality concerns.


Causally Perturbed Fairness Testing

Du, Chengwen, Chen, Tao

arXiv.org Artificial Intelligence

To mitigate unfair and unethical discrimination over sensitive features (e.g., gender, age, or race), fairness testing plays an integral role in engineering systems that leverage AI models to handle tabular data. A key challenge therein is how to effectively reveal fairness bugs under an intractable sample size using perturbation. Much current work has been focusing on designing the test sample generators, ignoring the valuable knowledge about data characteristics that can help guide the perturbation and hence limiting their full potential. In this paper, we seek to bridge such a gap by proposing a generic framework of causally perturbed fairness testing, dubbed CausalFT. Through causal inference, the key idea of CausalFT is to extract the most directly and causally relevant non-sensitive feature to its sensitive counterpart, which can jointly influence the prediction of the label. Such a causal relationship is then seamlessly injected into the perturbation to guide a test sample generator. Unlike existing generator-level work, CausalFT serves as a higher-level framework that can be paired with diverse base generators. Extensive experiments on 1296 cases confirm that CausalFT can considerably improve arbitrary base generators in revealing fairness bugs over 93% of the cases with acceptable extra runtime overhead. Compared with a state-of-the-art approach that ranks the non-sensitive features solely based on correlation, CausalFT performs significantly better on 64% cases while being much more efficient. Further, CausalFT can better improve bias resilience in nearly all cases.


PoissonNet: A Local-Global Approach for Learning on Surfaces

Maesumi, Arman, Makadia, Tanish, Groueix, Thibault, Kim, Vladimir G., Ritchie, Daniel, Aigerman, Noam

arXiv.org Artificial Intelligence

Many network architectures exist for learning on meshes, yet their constructions entail delicate trade-offs between difficulty learning high-frequency features, insufficient receptive field, sensitivity to discretization, and inefficient computational overhead. Drawing from classic local-global approaches in mesh processing, we introduce PoissonNet, a novel neural architecture that overcomes all of these deficiencies by formulating a local-global learning scheme, which uses Poisson's equation as the primary mechanism for feature propagation. Our core network block is simple; we apply learned local feature transformations in the gradient domain of the mesh, then solve a Poisson system to propagate scalar feature updates across the surface globally. Our local-global learning framework preserves the features's full frequency spectrum and provides a truly global receptive field, while remaining agnostic to mesh triangulation. Our construction is efficient, requiring far less compute overhead than comparable methods, which enables scalability -- both in the size of our datasets, and the size of individual training samples. These qualities are validated on various experiments where, compared to previous intrinsic architectures, we attain state-of-the-art performance on semantic segmentation and parameterizing highly-detailed animated surfaces. Finally, as a central application of PoissonNet, we show its ability to learn deformations, significantly outperforming state-of-the-art architectures that learn on surfaces.


Deep Learning-based Intrusion Detection Systems: A Survey

Xu, Zhiwei, Wu, Yujuan, Wang, Shiheng, Gao, Jiabao, Qiu, Tian, Wang, Ziqi, Wan, Hai, Zhao, Xibin

arXiv.org Artificial Intelligence

Intrusion Detection Systems (IDS) have long been a hot topic in the cybersecurity community. In recent years, with the introduction of deep learning (DL) techniques, IDS have made great progress due to their increasing generalizability. The rationale behind this is that by learning the underlying patterns of known system behaviors, IDS detection can be generalized to intrusions that exploit zero-day vulnerabilities. In this survey, we refer to this type of IDS as DL-based IDS (DL-IDS). From the perspective of DL, this survey systematically reviews all the stages of DL-IDS, including data collection, log storage, log parsing, graph summarization, attack detection, and attack investigation. To accommodate current researchers, a section describing the publicly available benchmark datasets is included. This survey further discusses current challenges and potential future research directions, aiming to help researchers understand the basic ideas and visions of DL-IDS research, as well as to motivate their research interests.


Explainable Graph Neural Networks: Understanding Brain Connectivity and Biomarkers in Dementia

Tewari, Niharika, Le, Nguyen Linh Dan, Liu, Mujie, Ren, Jing, Xu, Ziqi, Sarwar, Tabinda, Baths, Veeky, Xia, Feng

arXiv.org Artificial Intelligence

Dementia is a progressive neurodegenerative disorder with multiple etiologies, including Alzheimer's disease, Parkinson's disease, frontotemporal dementia, and vascular dementia. Its clinical and biological heterogeneity makes diagnosis and subtype differentiation highly challenging. Graph Neural Networks (GNNs) have recently shown strong potential in modeling brain connectivity, but their limited robustness, data scarcity, and lack of interpretability constrain clinical adoption. Explainable Graph Neural Networks (XGNNs) have emerged to address these barriers by combining graph-based learning with interpretability, enabling the identification of disease-relevant biomarkers, analysis of brain network disruptions, and provision of transparent insights for clinicians. This paper presents the first comprehensive review dedicated to XGNNs in dementia research. We examine their applications across Alzheimer's disease, Parkinson's disease, mild cognitive impairment, and multi-disease diagnosis. A taxonomy of explainability methods tailored for dementia-related tasks is introduced, alongside comparisons of existing models in clinical scenarios. We also highlight challenges such as limited generalizability, underexplored domains, and the integration of Large Language Models (LLMs) for early detection. By outlining both progress and open problems, this review aims to guide future work toward trustworthy, clinically meaningful, and scalable use of XGNNs in dementia research.


Fusing Cross-Domain Knowledge from Multimodal Data to Solve Problems in the Physical World

Zheng, Yu

arXiv.org Artificial Intelligence

The proliferation of artificial intelligence has enabled a diversity of applications that bridge the gap between digital and physical worlds. As physical environments are too complex to model through a single information acquisition approach, it is crucial to fuse multimodal data generated by different sources, such as sensors, devices, systems, and people, to solve a problem in the real world. Unfortunately, it is neither applicable nor sustainable to deploy new resources to collect original data from scratch for every problem. Thus, when data is inadequate in the domain of problem, it is vital to fuse knowledge from multimodal data that is already available in other domains. We call this cross-domain knowledge fusion. Existing research focus on fusing multimodal data in a single domain, supposing the knowledge from different datasets is intrinsically aligned; however, this assumption may not hold in the scenarios of cross-domain knowledge fusion. In this paper, we formally define the cross-domain multimodal data fusion problem, discussing its unique challenges, differences and advantages beyond data fusion in a single domain. We propose a four-layer framework, consisting of Domains, Links, Models and Data layers, answering three key questions:"what to fuse", "why can be fused", and "how to fuse". The Domains Layer selects relevant data from different domains for a given problem. The Links Layer reveals the philosophy of knowledge alignment beyond specific model structures. The Models Layer provides two knowledge fusion paradigms based on the fundamental mechanisms for processing data. The Data Layer turns data of different structures, resolutions, scales and distributions into a consistent representation that can be fed into an AI model. With this framework, we can design solutions that fuse cross-domain multimodal data effectively for solving real-world problems.


Constella: Supporting Storywriters' Interconnected Character Creation through LLM-based Multi-Agents

Park, Syemin, Park, Soobin, Lim, Youn-kyung

arXiv.org Artificial Intelligence

Creating a cast of characters by attending to their relational dynamics is a critical aspect of most long-form storywriting. However, our formative study (N=14) reveals that writers struggle to envision new characters that could influence existing ones, to balance similarities and differences among characters, and to intricately flesh out their relationships. Based on these observations, we designed Constella, an LLM-based multi-agent tool that supports storywriters' interconnected character creation process. Constella suggests related characters (FRIENDS DISCOVERY feature), reveals the inner mindscapes of several characters simultaneously (JOURNALS feature), and manifests relationships through inter-character responses (COMMENTS feature). Our 7-8 day deployment study with storywriters (N=11) shows that Constella enabled the creation of expansive communities composed of related characters, facilitated the comparison of characters' thoughts and emotions, and deepened writers' understanding of character relationships. We conclude by discussing how multi-agent interactions can help distribute writers' attention and effort across the character cast.


A GenAI System for Improved FAIR Independent Biological Database Integration

Sakib, Syed N., Naha, Kallol, Rubaiat, Sajratul Y., Jamil, Hasan M.

arXiv.org Artificial Intelligence

Life sciences research increasingly requires identifying, accessing, and effectively processing data from an ever-evolving array of information sources on the Linked Open Data (LOD) network. This dynamic landscape places a significant burden on researchers, as the quality of query responses depends heavily on the selection and semantic integration of data sources --processes that are often labor-intensive, error-prone, and costly. While the adoption of FAIR (Findable, Accessible, Interoperable, and Reusable) data principles has aimed to address these challenges, barriers to efficient and accurate scientific data processing persist. In this paper, we introduce FAIRBridge, an experimental natural language-based query processing system designed to empower scientists to discover, access, and query biological databases, even when they are not FAIR-compliant. FAIRBridge harnesses the capabilities of AI to interpret query intents, map them to relevant databases described in scientific literature, and generate executable queries via intelligent resource access plans. The system also includes robust tools for mitigating low-quality query processing, ensuring high fidelity and responsiveness in the information delivered. FAIRBridge's autonomous query processing framework enables users to explore alternative data sources, make informed choices at every step, and leverage community-driven crowd curation when needed. By providing a user-friendly, automated hypothesis-testing platform in natural English, FAIRBridge significantly enhances the integration and processing of scientific data, offering researchers a powerful new tool for advancing their inquiries.